Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trap transporter 4tm/12tm fusion protein | CLV88_104111 | Not Available | Positive | 1819395 - 1821995 | 92810.1 |
| nucleotide-binding universal stress uspa family protein | CLV88_104112 | Not Available | Positive | 1821992 - 1822417 | 15320.5 |
| Trna-leu | Not Available | Not Available | Positive | 1822460 - 1822546 | Not Available |
| tetratricopeptide repeat protein | CLV88_104114 | Not Available | Negative | 1822615 - 1823148 | 19064.4 |
| asnc family transcriptional regulator | CLV88_104115 | Not Available | Negative | 1823206 - 1823679 | 17062.7 |
| l-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase | CLV88_104116 | Not Available | Positive | 1823784 - 1827206 | 121132.0 |
| membrane associated rhomboid family serine protease | CLV88_104117 | Not Available | Positive | 1827238 - 1827981 | 27377.8 |
| hypothetical protein | CLV88_104118 | Not Available | Positive | 1827978 - 1828346 | 13613.0 |
| myo-inositol-1(or 4)-monophosphatase | CLV88_104119 | Not Available | Negative | 1828366 - 1829157 | 28502.1 |
| oxidoreductase family protein | CLV88_104120 | Not Available | Positive | 1829353 - 1829502 | 5544.55 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
