Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tade-like protein | CLV88_10491 | Not Available | Positive | 1798201 - 1798737 | 19941.2 |
| tade-like protein | CLV88_10492 | Not Available | Positive | 1798744 - 1799295 | 20454.1 |
| hypothetical protein | CLV88_10493 | Not Available | Negative | 1799298 - 1799777 | 17405.5 |
| hypothetical protein | CLV88_10494 | Not Available | Positive | 1800012 - 1800380 | 13384.2 |
| hippurate hydrolase | CLV88_10495 | Not Available | Negative | 1800440 - 1801612 | 42029.1 |
| putative transposase of is4/5 family duf4096 | CLV88_10496 | Not Available | Positive | 1801830 - 1802012 | 7084.62 |
| hypothetical protein | CLV88_10497 | Not Available | Positive | 1802795 - 1803604 | 29241.5 |
| aryl-alcohol dehydrogenase-like predicted oxidoreductase | CLV88_10498 | Not Available | Negative | 1803634 - 1804677 | 38027.3 |
| agmatinase | CLV88_10499 | Not Available | Negative | 1804774 - 1805733 | 34153.3 |
| protein imua | CLV88_104100 | Not Available | Positive | 1805838 - 1806503 | 24157.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
