Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10481 | Not Available | Negative | 1786511 - 1786834 | 11760.1 |
| sarcosine oxidase subunit gamma | CLV88_10482 | Not Available | Negative | 1786877 - 1787428 | 19401.6 |
| sarcosine oxidase subunit alpha | CLV88_10483 | Not Available | Negative | 1787421 - 1790351 | 105218.0 |
| sarcosine oxidase subunit delta | CLV88_10484 | Not Available | Negative | 1790348 - 1790620 | 10155.7 |
| sarcosine oxidase subunit beta | CLV88_10485 | Not Available | Negative | 1790682 - 1791950 | 46330.5 |
| hypothetical protein | CLV88_10486 | Not Available | Positive | 1792074 - 1792961 | 32213.8 |
| hypothetical protein | CLV88_10487 | Not Available | Negative | 1792969 - 1793868 | 31478.8 |
| hypothetical protein | CLV88_10488 | Not Available | Negative | 1794013 - 1794612 | 21358.0 |
| glutamate dehydrogenase (nad(p)+) | CLV88_10489 | Not Available | Negative | 1794616 - 1796046 | 52716.8 |
| flp pilus assembly protein tadg | CLV88_10490 | Not Available | Positive | 1796372 - 1798204 | 68694.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
