Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase | CLV88_10471 | Not Available | Negative | 1777705 - 1778751 | 36447.0 |
| transcriptional repressor nrdr | CLV88_10472 | Not Available | Negative | 1778806 - 1779315 | 19612.3 |
| secondary thiamine-phosphate synthase enzyme | CLV88_10473 | Not Available | Negative | 1779471 - 1779890 | 15532.6 |
| hypothetical protein | CLV88_10474 | Not Available | Negative | 1779903 - 1780313 | 14663.6 |
| hypothetical protein | CLV88_10475 | Not Available | Negative | 1780383 - 1780796 | 14757.3 |
| hypothetical protein | CLV88_10476 | Not Available | Negative | 1780906 - 1781313 | 14241.7 |
| hypothetical protein | CLV88_10477 | Not Available | Negative | 1781443 - 1781856 | 14594.0 |
| hypothetical protein | CLV88_10478 | Not Available | Negative | 1781986 - 1782282 | 10546.5 |
| rna polymerase primary sigma factor | CLV88_10479 | Not Available | Negative | 1782378 - 1784366 | 75349.5 |
| dna primase | CLV88_10480 | Not Available | Negative | 1784485 - 1786437 | 72013.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
