Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_101147 | Not Available | Negative | 149064 - 150059 | 36191.4 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_101148 | Not Available | Negative | 150052 - 151149 | 39750.7 |
| hypothetical protein | CLV88_101149 | Not Available | Negative | 151156 - 151344 | 7051.22 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_101150 | Not Available | Negative | 151341 - 152279 | 34491.6 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_101151 | Not Available | Negative | 152276 - 153223 | 35799.3 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_101152 | Not Available | Negative | 153377 - 154693 | 48255.9 |
| laci family transcriptional regulator | CLV88_101153 | Not Available | Positive | 154888 - 155916 | 37252.8 |
| uncharacterized protein (upf0335 family) | CLV88_101154 | Not Available | Negative | 155932 - 156195 | 10234.1 |
| hypothetical protein | CLV88_101155 | Not Available | Positive | 156365 - 156580 | 7489.66 |
| 3-hydroxyacyl-coa dehydrogenase | CLV88_101156 | Not Available | Negative | 156598 - 158676 | 73583.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
