Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nusb antitermination factor | CLV88_10461 | Not Available | Negative | 1767721 - 1768191 | 17447.8 |
| 6,7-dimethyl-8-ribityllumazine synthase | CLV88_10462 | Not Available | Negative | 1768188 - 1768739 | 19288.1 |
| 3,4-dihydroxy 2-butanone 4-phosphate synthase/gtp cyclohydrolase ii | CLV88_10463 | Not Available | Negative | 1768743 - 1769864 | 40096.0 |
| steroid delta-isomerase-like uncharacterized protein | CLV88_10464 | Not Available | Negative | 1769994 - 1770428 | 15744.5 |
| proline racemase | CLV88_10465 | Not Available | Positive | 1770583 - 1771635 | 37041.5 |
| glutathione s-transferase | CLV88_10466 | Not Available | Positive | 1771632 - 1772282 | 24781.7 |
| riboflavin synthase alpha chain | CLV88_10467 | Not Available | Negative | 1772432 - 1773022 | 20804.6 |
| capsular polysaccharide export protein | CLV88_10468 | Not Available | Positive | 1773252 - 1774463 | 46214.7 |
| polysaccharide export outer membrane protein | CLV88_10469 | Not Available | Positive | 1774560 - 1775696 | 40136.9 |
| capsular polysaccharide export protein | CLV88_10470 | Not Available | Positive | 1775698 - 1777698 | 73765.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
