Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10450 | Not Available | Positive | 1759407 - 1760600 | 44547.4 |
| 3-oxoadipate enol-lactonase | CLV88_10451 | Not Available | Positive | 1760619 - 1761407 | 28804.7 |
| pimeloyl-acp methyl ester carboxylesterase | CLV88_10452 | Not Available | Positive | 1761400 - 1762122 | 26194.2 |
| hypothetical protein | CLV88_10453 | Not Available | Negative | 1762119 - 1762571 | 17271.8 |
| adenylate cyclase | CLV88_10455 | Not Available | Negative | 1762863 - 1764224 | 49657.7 |
| arsr family transcriptional regulator | CLV88_10456 | Not Available | Positive | 1764454 - 1764822 | 13988.5 |
| uncharacterized protein yndb with ahsa1/start domain | CLV88_10457 | Not Available | Positive | 1764794 - 1765222 | 15970.9 |
| nitroreductase | CLV88_10458 | Not Available | Positive | 1765426 - 1766118 | 25329.3 |
| hypothetical protein | CLV88_10459 | Not Available | Negative | 1766119 - 1766427 | 11015.7 |
| hypothetical protein | CLV88_10460 | Not Available | Positive | 1766610 - 1767563 | 35130.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
