Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| [lsu ribosomal protein l11p]-lysine n-methyltransferase | CLV88_10440 | Not Available | Negative | 1748744 - 1749613 | 30200.6 |
| hypothetical protein | CLV88_10441 | Not Available | Negative | 1749677 - 1750432 | 27139.5 |
| putative mate family efflux protein | CLV88_10442 | Not Available | Negative | 1750429 - 1751757 | 46555.7 |
| hypothetical protein | CLV88_10443 | Not Available | Negative | 1751761 - 1752993 | 45253.6 |
| replication restart dna helicase pria | CLV88_10444 | Not Available | Negative | 1753149 - 1755359 | 79742.3 |
| transaldolase | CLV88_10445 | Not Available | Positive | 1755480 - 1756133 | 23128.0 |
| fkbp-type peptidyl-prolyl cis-trans isomerase 2 | CLV88_10446 | Not Available | Negative | 1756244 - 1756672 | 14969.8 |
| 2-haloacid dehalogenase | CLV88_10447 | Not Available | Positive | 1756814 - 1757500 | 25142.6 |
| pimeloyl-acp methyl ester carboxylesterase | CLV88_10448 | Not Available | Positive | 1757500 - 1758342 | 30558.4 |
| threonine dehydratase | CLV88_10449 | Not Available | Positive | 1758339 - 1759313 | 33744.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
