Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division and transport-associated protein tolq | CLV88_10430 | Not Available | Negative | 1740707 - 1741381 | 24457.7 |
| acyl-coa thioester hydrolase | CLV88_10431 | Not Available | Negative | 1741550 - 1741948 | 15106.4 |
| broad specificity phosphatase phoe | CLV88_10432 | Not Available | Positive | 1741987 - 1742577 | 20611.1 |
| glutamate synthase domain-containing protein 2 | CLV88_10433 | Not Available | Negative | 1742570 - 1744111 | 53996.6 |
| hypothetical protein | CLV88_10434 | Not Available | Negative | 1744279 - 1744923 | 23276.1 |
| holliday junction dna helicase subunit ruvb | CLV88_10435 | Not Available | Negative | 1745152 - 1746189 | 38131.9 |
| holliday junction dna helicase subunit ruva | CLV88_10436 | Not Available | Negative | 1746193 - 1746894 | 23566.4 |
| holliday junction endonuclease ruvc | CLV88_10437 | Not Available | Negative | 1746891 - 1747397 | 17755.6 |
| uncharacterized protein duf1127 | CLV88_10438 | Not Available | Positive | 1747731 - 1747919 | 6730.84 |
| hypothetical protein | CLV88_10439 | Not Available | Negative | 1748150 - 1748494 | 12927.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
