Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trans-aconitate 2-methyltransferase | CLV88_10420 | Not Available | Negative | 1731043 - 1731807 | 27626.9 |
| hypothetical protein | CLV88_10421 | Not Available | Positive | 1731948 - 1732337 | 14136.1 |
| res domain-containing protein | CLV88_10422 | Not Available | Positive | 1732334 - 1733029 | 25868.2 |
| membrane protease ftsh catalytic subunit | CLV88_10423 | Not Available | Negative | 1733098 - 1735017 | 69411.0 |
| trna(ile)-lysidine synthase | CLV88_10424 | Not Available | Negative | 1735119 - 1736324 | 43524.2 |
| tol-pal system protein ybgf | CLV88_10425 | Not Available | Negative | 1736345 - 1737181 | 29558.5 |
| peptidoglycan-associated lipoprotein | CLV88_10426 | Not Available | Negative | 1737185 - 1737703 | 18417.5 |
| tolb protein | CLV88_10427 | Not Available | Negative | 1737779 - 1739104 | 47425.1 |
| cell division and transport-associated protein tola | CLV88_10428 | Not Available | Negative | 1739101 - 1740189 | 38157.8 |
| cell division and transport-associated protein tolr | CLV88_10429 | Not Available | Negative | 1740200 - 1740703 | 17291.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
