Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsr family transcriptional regulator | CLV88_10410 | Not Available | Positive | 1721580 - 1721906 | 11902.5 |
| atp-dependent lhr-like helicase | CLV88_10411 | Not Available | Positive | 1721913 - 1724348 | 89543.7 |
| putative phosphoesterase | CLV88_10412 | Not Available | Positive | 1724452 - 1725114 | 23972.7 |
| lyttr family transcriptional regulator | CLV88_10413 | Not Available | Negative | 1725141 - 1725905 | 27871.7 |
| uncharacterized protein (tigr00369 family) | CLV88_10414 | Not Available | Positive | 1726024 - 1726452 | 15036.5 |
| methenyltetrahydrofolate cyclohydrolase /5,10-methylenetetrahydrofolate dehydrogenase (nadp+) | CLV88_10415 | Not Available | Negative | 1726499 - 1727401 | 31404.0 |
| chorismate mutase | CLV88_10416 | Not Available | Negative | 1727412 - 1727717 | 11060.5 |
| formate-tetrahydrofolate ligase | CLV88_10417 | Not Available | Negative | 1727775 - 1729451 | 59788.8 |
| hypothetical protein | CLV88_10418 | Not Available | Negative | 1729783 - 1730340 | 21066.3 |
| hypothetical protein | CLV88_10419 | Not Available | Negative | 1730432 - 1731031 | 21195.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
