Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_103406 | Not Available | Positive | 1715236 - 1715429 | 7370.82 |
| hypothetical protein | CLV88_1041 | Not Available | Positive | 1715430 - 1715581 | 5498.51 |
| Trna-his | Not Available | Not Available | Positive | 1715726 - 1715802 | Not Available |
| acetyltransferase (gnat) family protein | CLV88_1043 | Not Available | Negative | 1715847 - 1716338 | 18269.8 |
| hypothetical protein | CLV88_1044 | Not Available | Positive | 1716407 - 1716595 | 6691.73 |
| dha1 family tetracycline resistance protein-like mfs transporter | CLV88_1045 | Not Available | Positive | 1716761 - 1717975 | 42877.7 |
| zn-dependent alcohol dehydrogenase | CLV88_1046 | Not Available | Positive | 1718067 - 1719152 | 37157.0 |
| l-alanine-dl-glutamate epimerase-like enolase superfamily enzyme | CLV88_1047 | Not Available | Positive | 1719225 - 1720454 | 44671.1 |
| putative dcc family thiol-disulfide oxidoreductase yuxk | CLV88_1048 | Not Available | Positive | 1720498 - 1720947 | 16822.3 |
| uncharacterized protein duf4166 | CLV88_1049 | Not Available | Positive | 1720944 - 1721483 | 20160.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
