Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trans-2,3-dihydro-3-hydroxyanthranilate isomerase | CLV88_103376 | Not Available | Negative | 1684636 - 1685478 | 29994.6 |
| sodium/proton antiporter (cpa1 family) | CLV88_103377 | Not Available | Negative | 1685483 - 1686742 | 44247.5 |
| endonuclease/exonuclease/phosphatase family metal-dependent hydrolase | CLV88_103378 | Not Available | Negative | 1686799 - 1687491 | 25348.0 |
| uncharacterized protein ydiu (upf0061 family) | CLV88_103379 | Not Available | Negative | 1687531 - 1688940 | 51555.0 |
| acetyltransferase (gnat) family protein | CLV88_103380 | Not Available | Negative | 1689007 - 1689459 | 16582.9 |
| purine nucleosidase | CLV88_103381 | Not Available | Negative | 1689456 - 1690397 | 33831.8 |
| g3e family gtpase | CLV88_103382 | Not Available | Positive | 1690701 - 1691912 | 45039.0 |
| uncharacterized protein duf1826 | CLV88_103383 | Not Available | Positive | 1691909 - 1692583 | 24572.6 |
| hint domain-containing protein | CLV88_103384 | Not Available | Negative | 1692606 - 1693733 | 40362.6 |
| iron(iii) transport system substrate-binding protein | CLV88_103385 | Not Available | Negative | 1694032 - 1695045 | 36337.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
