Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hint domain-containing protein | CLV88_101137 | Not Available | Negative | 136263 - 137312 | 38319.0 |
| hypothetical protein | CLV88_101138 | Not Available | Negative | 137303 - 138178 | 32407.7 |
| acetyl-coenzyme a synthetase | CLV88_101139 | Not Available | Positive | 138710 - 140674 | 71789.4 |
| adenylate kinase | CLV88_101140 | Not Available | Positive | 140680 - 141363 | 23463.8 |
| putative solute:sodium symporter small subunit | CLV88_101141 | Not Available | Positive | 141434 - 141691 | 9458.54 |
| cation/acetate symporter | CLV88_101142 | Not Available | Positive | 141707 - 143494 | 63059.9 |
| cbs domain-containing protein | CLV88_101143 | Not Available | Positive | 143603 - 145432 | 66335.6 |
| hypothetical protein | CLV88_101144 | Not Available | Positive | 145500 - 146021 | 19172.1 |
| dna polymerase-3 subunit epsilon | CLV88_101145 | Not Available | Positive | 146021 - 147433 | 50695.3 |
| dihydroxyacetone kinase | CLV88_101146 | Not Available | Negative | 147430 - 149052 | 55932.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
