Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator | CLV88_103366 | Not Available | Positive | 1672194 - 1672967 | 28587.7 |
| cytochrome c-type biogenesis protein ccmf | CLV88_103367 | Not Available | Positive | 1672964 - 1674943 | 71112.0 |
| cytochrome c-type biogenesis protein ccmh | CLV88_103368 | Not Available | Positive | 1674954 - 1675418 | 17107.8 |
| cytochrome c-type biogenesis protein ccmh | CLV88_103369 | Not Available | Positive | 1675415 - 1676830 | 50727.7 |
| hypothetical protein | CLV88_103370 | Not Available | Negative | 1676846 - 1678555 | 65118.5 |
| ctp:molybdopterin cytidylyltransferase moca | CLV88_103371 | Not Available | Negative | 1678522 - 1679115 | 21126.6 |
| dimethylglycine dehydrogenase | CLV88_103372 | Not Available | Negative | 1679236 - 1681653 | 89302.1 |
| phosphotransferase family enzyme | CLV88_103373 | Not Available | Positive | 1681871 - 1682569 | 25546.5 |
| fur family manganese uptake regulator | CLV88_103374 | Not Available | Negative | 1682573 - 1682989 | 15760.8 |
| atp-dependent rna helicase rhle | CLV88_103375 | Not Available | Positive | 1683344 - 1684639 | 46731.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
