Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phytoene/squalene synthetase | CLV88_103346 | Not Available | Positive | 1654018 - 1654788 | 28024.7 |
| putative mfs family arabinose efflux permease | CLV88_103347 | Not Available | Negative | 1654888 - 1656108 | 41853.2 |
| dna-3-methyladenine glycosylase ii | CLV88_103348 | Not Available | Positive | 1656204 - 1656836 | 23256.9 |
| phospholipase/carboxylesterase | CLV88_103349 | Not Available | Positive | 1656903 - 1657571 | 24094.8 |
| lysr family transcriptional regulator | CLV88_103350 | Not Available | Negative | 1657568 - 1658392 | 30654.8 |
| 5-methylcytosine-specific restriction endonuclease mcra | CLV88_103351 | Not Available | Positive | 1659105 - 1659689 | 22223.6 |
| ornithine cyclodeaminase | CLV88_103352 | Not Available | Negative | 1659836 - 1660882 | 37891.4 |
| hypothetical protein | CLV88_103353 | Not Available | Negative | 1660883 - 1661806 | 34103.5 |
| arginase | CLV88_103354 | Not Available | Negative | 1661803 - 1662726 | 32938.0 |
| asnc family transcriptional regulator | CLV88_103355 | Not Available | Positive | 1662836 - 1663270 | 15797.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
