Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_103336 | Not Available | Positive | 1644760 - 1644960 | 7336.94 |
| ef hand domain-containing protein | CLV88_103337 | Not Available | Positive | 1645079 - 1645324 | 8157.58 |
| trimethylamine--corrinoid protein co-methyltransferase | CLV88_103338 | Not Available | Negative | 1645376 - 1646914 | 54966.0 |
| arginine:pyruvate transaminase | CLV88_103339 | Not Available | Negative | 1647138 - 1648328 | 42244.3 |
| merr family transcriptional regulator | CLV88_103340 | Not Available | Negative | 1648673 - 1649161 | 18361.2 |
| catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme | CLV88_103341 | Not Available | Positive | 1649229 - 1649603 | 13703.9 |
| putative dna-binding protein (mmcq/yjbr family) | CLV88_103342 | Not Available | Negative | 1649700 - 1650080 | 13497.2 |
| cysteinyl-trna synthetase | CLV88_103343 | Not Available | Positive | 1650268 - 1651644 | 50006.4 |
| 2-isopropylmalate synthase | CLV88_103344 | Not Available | Positive | 1651644 - 1653275 | 58463.9 |
| methyltransferase family protein | CLV88_103345 | Not Available | Positive | 1653275 - 1654006 | 26382.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
