Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | CLV88_103326 | Not Available | Positive | 1634955 - 1635290 | 12243.5 |
| acetyltransferase (gnat) family protein | CLV88_103327 | Not Available | Positive | 1635322 - 1635834 | 19116.3 |
| hypothetical protein | CLV88_103328 | Not Available | Negative | 1635831 - 1636574 | 27760.2 |
| enoyl-[acyl-carrier-protein] reductase | CLV88_103329 | Not Available | Negative | 1636587 - 1637396 | 28771.5 |
| pyridoxamine 5'-phosphate oxidase | CLV88_103330 | Not Available | Positive | 1637545 - 1638150 | 22599.6 |
| putative cold-shock dna-binding protein | CLV88_103331 | Not Available | Positive | 1638253 - 1638819 | 20695.3 |
| hypothetical protein | CLV88_103332 | Not Available | Positive | 1638819 - 1639319 | 17996.8 |
| Trna-pro | Not Available | Not Available | Positive | 1639412 - 1639488 | Not Available |
| 3',5'-cyclic amp phosphodiesterase cpda | CLV88_103334 | Not Available | Negative | 1639519 - 1640307 | 29335.8 |
| ribonucleoside-diphosphate reductase class ii | CLV88_103335 | Not Available | Positive | 1640875 - 1644627 | 136083.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
