Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase 2 family uncharacterized protein yibq | CLV88_103316 | Not Available | Positive | 1625143 - 1626549 | 48262.6 |
| hypothetical protein | CLV88_103317 | Not Available | Positive | 1626596 - 1626808 | 8222.19 |
| hypothetical protein | CLV88_103318 | Not Available | Positive | 1627010 - 1627645 | 24004.0 |
| anthranilate synthase component i | CLV88_103319 | Not Available | Negative | 1627749 - 1629260 | 54789.1 |
| peptidyl-prolyl cis-trans isomerase d | CLV88_103320 | Not Available | Negative | 1629281 - 1631122 | 66255.5 |
| aspartate/methionine/tyrosine aminotransferase | CLV88_103321 | Not Available | Negative | 1631295 - 1632470 | 42852.6 |
| quinol monooxygenase ygin | CLV88_103322 | Not Available | Negative | 1632560 - 1632868 | 11060.0 |
| xanthine phosphoribosyltransferase | CLV88_103323 | Not Available | Negative | 1632903 - 1633406 | 18829.3 |
| nucleotide-binding universal stress uspa family protein | CLV88_103324 | Not Available | Positive | 1633682 - 1634128 | 15422.6 |
| hypothetical protein | CLV88_103325 | Not Available | Positive | 1634245 - 1634853 | 21863.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
