Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamyl-trna synthetase | CLV88_103306 | Not Available | Negative | 1615770 - 1617194 | 52563.2 |
| competence protein comec | CLV88_103307 | Not Available | Positive | 1617273 - 1618784 | 53207.0 |
| hypothetical protein | CLV88_103308 | Not Available | Positive | 1618787 - 1619311 | 18902.6 |
| sos-response transcriptional repressor lexa | CLV88_103309 | Not Available | Negative | 1619349 - 1620056 | 25502.8 |
| molybdopterin molybdotransferase | CLV88_103310 | Not Available | Negative | 1620192 - 1621367 | 40992.3 |
| cyclic pyranopterin monophosphate synthase subunit moac | CLV88_103311 | Not Available | Negative | 1621364 - 1621858 | 17224.9 |
| indole-3-glycerol phosphate synthase | CLV88_103312 | Not Available | Negative | 1621858 - 1622670 | 29373.9 |
| uracil-dna glycosylase | CLV88_103313 | Not Available | Negative | 1622667 - 1623335 | 24108.6 |
| anthranilate phosphoribosyltransferase | CLV88_103314 | Not Available | Negative | 1623393 - 1624412 | 35203.0 |
| anthranilate synthase component ii | CLV88_103315 | Not Available | Negative | 1624409 - 1625062 | 23722.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
