Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate racemase | CLV88_103296 | Not Available | Positive | 1606435 - 1607247 | 29290.0 |
| n-acetyl-gamma-glutamyl-phosphate reductase | CLV88_103297 | Not Available | Positive | 1607353 - 1608381 | 36900.4 |
| cytochrome c-type biogenesis protein ccme | CLV88_103298 | Not Available | Positive | 1608405 - 1608854 | 16232.4 |
| putative peptidoglycan binding protein | CLV88_103299 | Not Available | Positive | 1609002 - 1609613 | 22301.3 |
| holin (3tms family) | CLV88_103300 | Not Available | Positive | 1609604 - 1610161 | 20191.3 |
| cytochrome c-type biogenesis protein ccmf | CLV88_103301 | Not Available | Positive | 1610234 - 1612207 | 71305.3 |
| cytochrome c-type biogenesis protein ccmh | CLV88_103302 | Not Available | Positive | 1612204 - 1612671 | 17399.0 |
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase | CLV88_103303 | Not Available | Positive | 1612736 - 1613512 | 27978.3 |
| uncharacterized protein duf2087 | CLV88_103304 | Not Available | Negative | 1613519 - 1614019 | 18801.0 |
| citrate synthase | CLV88_103305 | Not Available | Negative | 1614392 - 1615687 | 48139.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
