Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosomal protein s18 acetylase rimi-like enzyme | CLV88_103286 | Not Available | Negative | 1594121 - 1594693 | 21388.7 |
| hypothetical protein | CLV88_103287 | Not Available | Positive | 1594714 - 1594914 | 7121.65 |
| monothiol glutaredoxin | CLV88_103288 | Not Available | Negative | 1594935 - 1595309 | 13561.9 |
| hypothetical protein | CLV88_103289 | Not Available | Negative | 1595314 - 1595604 | 11234.1 |
| stress-induced morphogen | CLV88_103290 | Not Available | Negative | 1595657 - 1595893 | 8422.09 |
| phosphoribosylformylglycinamidine synthase subunit ii | CLV88_103291 | Not Available | Negative | 1596047 - 1598206 | 76375.4 |
| small-conductance mechanosensitive channel | CLV88_103292 | Not Available | Negative | 1598344 - 1600629 | 83852.8 |
| lysr family transcriptional regulator | CLV88_103293 | Not Available | Negative | 1600924 - 1601829 | 34150.2 |
| indolepyruvate ferredoxin oxidoreductase | CLV88_103294 | Not Available | Positive | 1602004 - 1605423 | 123845.0 |
| putative hemolysin | CLV88_103295 | Not Available | Positive | 1605533 - 1606411 | 32826.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
