Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_103276 | Not Available | Negative | 1584796 - 1585215 | 15353.4 |
| malonate-semialdehyde dehydrogenase (acetylating)/methylmalonate-semialdehyde dehydrogenase | CLV88_103277 | Not Available | Negative | 1585437 - 1586936 | 53445.1 |
| lysr family transcriptional regulator | CLV88_103278 | Not Available | Positive | 1587040 - 1587936 | 33313.1 |
| cbs domain protein | CLV88_103279 | Not Available | Positive | 1587997 - 1588431 | 15296.7 |
| phosphopantetheine adenylyltransferase | CLV88_103280 | Not Available | Positive | 1588540 - 1589037 | 18258.2 |
| hypothetical protein | CLV88_103281 | Not Available | Positive | 1589191 - 1590162 | 33759.7 |
| uncharacterized protein ybaa (duf1428 family) | CLV88_103282 | Not Available | Positive | 1590259 - 1590633 | 13961.5 |
| transketolase | CLV88_103283 | Not Available | Negative | 1590694 - 1592793 | 75432.0 |
| hypothetical protein | CLV88_103284 | Not Available | Positive | 1592809 - 1593651 | 29926.2 |
| cell division protein zapa | CLV88_103285 | Not Available | Positive | 1593651 - 1594046 | 14065.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
