Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_101127 | Not Available | Positive | 126219 - 126452 | 8998.97 |
| hypothetical protein | CLV88_101128 | Not Available | Negative | 127070 - 127177 | 3906.99 |
| hemolysin type calcium-binding protein | CLV88_101129 | Not Available | Negative | 127200 - 128153 | 31904.2 |
| hypothetical protein | CLV88_101130 | Not Available | Negative | 128303 - 129091 | 29489.2 |
| pp_00129 | CLV88_101131 | Not Available | Negative | 129117 - 130109 | Not Available |
| ketosteroid isomerase-like protein | CLV88_101132 | Not Available | Negative | 130437 - 130937 | 18298.6 |
| lysr family transcriptional regulator | CLV88_101133 | Not Available | Positive | 131075 - 131953 | 31827.3 |
| celd/bcsl family acetyltransferase involved in cellulose biosynthesis | CLV88_101134 | Not Available | Negative | 131999 - 133219 | 46437.8 |
| hypothetical protein | CLV88_101135 | Not Available | Negative | 133216 - 134271 | 39157.4 |
| hypothetical protein | CLV88_101136 | Not Available | Positive | 134669 - 136204 | 49368.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
