Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein yndb with ahsa1/start domain | CLV88_103266 | Not Available | Negative | 1573154 - 1573582 | 16102.1 |
| arsr family transcriptional regulator | CLV88_103267 | Not Available | Negative | 1573572 - 1573919 | 13221.8 |
| excinuclease abc subunit a | CLV88_103268 | Not Available | Positive | 1574367 - 1577225 | 105897.0 |
| hypothetical protein | CLV88_103269 | Not Available | Negative | 1577260 - 1577697 | 15504.3 |
| xre family transcriptional regulator | CLV88_103270 | Not Available | Positive | 1577825 - 1578589 | 28087.8 |
| uncharacterized protein ycbk (duf882 family) | CLV88_103271 | Not Available | Negative | 1578743 - 1580215 | 52997.9 |
| 3-hydroxyisobutyrate dehydrogenase | CLV88_103272 | Not Available | Negative | 1580286 - 1581158 | 29390.9 |
| enoyl-coa hydratase | CLV88_103273 | Not Available | Negative | 1581163 - 1582203 | 37767.9 |
| hypothetical protein | CLV88_103274 | Not Available | Negative | 1582253 - 1583398 | 41147.1 |
| carboxylate-amine ligase | CLV88_103275 | Not Available | Negative | 1583587 - 1584720 | 43179.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
