Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative transposase | CLV88_103245 | Not Available | Negative | 1555760 - 1556560 | 31022.1 |
| putative transposase | CLV88_103246 | Not Available | Negative | 1556581 - 1556751 | 6505.02 |
| hypothetical protein | CLV88_103247 | Not Available | Negative | 1556748 - 1556846 | 3528.41 |
| hint domain-containing protein | CLV88_103248 | Not Available | Positive | 1557263 - 1558243 | 35265.6 |
| putative cold-shock dna-binding protein | CLV88_103250 | Not Available | Negative | 1558388 - 1558594 | 7146.36 |
| hypothetical protein | CLV88_103251 | Not Available | Positive | 1558851 - 1558970 | 4211.11 |
| hypothetical protein | CLV88_103252 | Not Available | Negative | 1559073 - 1559222 | 5115.03 |
| cytoskeletal protein ccma (bactofilin family) | CLV88_103253 | Not Available | Negative | 1559373 - 1559870 | 17075.4 |
| murein dd-endopeptidase mepm/ murein hydrolase activator nlpd | CLV88_103254 | Not Available | Negative | 1559860 - 1561200 | 50070.8 |
| uncharacterized ferritin-like protein (duf455 family) | CLV88_103255 | Not Available | Negative | 1561356 - 1562198 | 31131.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
