Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_103216 | Not Available | Negative | 1528192 - 1528434 | 9096.02 |
| pyruvate dehydrogenase e1 component alpha subunit | CLV88_103236 | Not Available | Negative | 1546627 - 1547616 | 36332.2 |
| cell division protein ftsb | CLV88_103237 | Not Available | Negative | 1547736 - 1548038 | 11198.6 |
| fructose-bisphosphate aldolase class i | CLV88_103238 | Not Available | Negative | 1548392 - 1549285 | 31867.0 |
| phosphoglycerate kinase | CLV88_103239 | Not Available | Negative | 1549487 - 1550677 | 40085.8 |
| peptidylprolyl isomerase | CLV88_103240 | Not Available | Positive | 1550828 - 1551340 | 18551.9 |
| peptidylprolyl isomerase | CLV88_103241 | Not Available | Positive | 1551333 - 1551881 | 19108.6 |
| hypothetical protein | CLV88_103242 | Not Available | Positive | 1551995 - 1552360 | 12850.0 |
| multidrug resistance efflux pump | CLV88_103243 | Not Available | Positive | 1552353 - 1553579 | 44074.3 |
| uncharacterized protein duf3604 | CLV88_103244 | Not Available | Negative | 1553637 - 1555565 | 70970.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
