Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lsu ribosomal protein l9p | CLV88_103206 | Not Available | Negative | 1520203 - 1520826 | 22201.8 |
| ssu ribosomal protein s18p | CLV88_103207 | Not Available | Negative | 1520838 - 1521065 | 8678.83 |
| ssu ribosomal protein s6p | CLV88_103208 | Not Available | Negative | 1521091 - 1521447 | 13629.2 |
| hypothetical protein | CLV88_103209 | Not Available | Positive | 1521736 - 1522230 | 17964.8 |
| [acyl-carrier-protein] s-malonyltransferase | CLV88_103210 | Not Available | Positive | 1522372 - 1523313 | 32220.6 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | CLV88_103211 | Not Available | Positive | 1523399 - 1524136 | 25384.8 |
| acyl carrier protein | CLV88_103212 | Not Available | Positive | 1524371 - 1524604 | 8375.7 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | CLV88_103213 | Not Available | Positive | 1524843 - 1525589 | 26562.7 |
| 3-oxoacyl-[acyl-carrier-protein] synthase ii | CLV88_103214 | Not Available | Positive | 1525758 - 1527017 | 43972.1 |
| upf0755 protein | CLV88_103215 | Not Available | Positive | 1527017 - 1528168 | 41339.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
