Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| taurine transport system permease protein | CLV88_103196 | Not Available | Positive | 1508675 - 1509949 | 45918.9 |
| peptide/nickel transport system substrate-binding protein | CLV88_103197 | Not Available | Positive | 1510101 - 1511672 | 57373.3 |
| peptide/nickel transport system permease protein | CLV88_103198 | Not Available | Positive | 1511723 - 1512685 | 35361.4 |
| peptide/nickel transport system permease protein | CLV88_103199 | Not Available | Positive | 1512682 - 1513620 | 33980.4 |
| peptide/nickel transport system atp-binding protein | CLV88_103200 | Not Available | Positive | 1513630 - 1515336 | 62351.3 |
| hypothetical protein | CLV88_103201 | Not Available | Positive | 1515595 - 1516692 | 39214.9 |
| trigger factor | CLV88_103202 | Not Available | Positive | 1516832 - 1518166 | 49374.9 |
| aquaporin z | CLV88_103203 | Not Available | Positive | 1518380 - 1519066 | 22998.3 |
| uncharacterized protein (duf1330 family) | CLV88_103204 | Not Available | Positive | 1519159 - 1519572 | 15705.6 |
| transglycosylase-like protein with slt domain | CLV88_103205 | Not Available | Negative | 1519576 - 1520091 | 19609.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
