Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative abc transport system permease protein | CLV88_103186 | Not Available | Negative | 1496588 - 1497760 | 43338.0 |
| sulfotransferase family protein | CLV88_103187 | Not Available | Negative | 1497807 - 1498808 | 37592.5 |
| beta-hydroxylase | CLV88_103188 | Not Available | Positive | 1498852 - 1499646 | 30736.3 |
| hypothetical protein | CLV88_103189 | Not Available | Positive | 1499648 - 1500742 | 37374.8 |
| gh3 auxin-responsive promoter | CLV88_103190 | Not Available | Positive | 1500813 - 1502504 | 62097.7 |
| hypothetical protein | CLV88_103191 | Not Available | Positive | 1502561 - 1502818 | 9678.62 |
| dimethylglycine dehydrogenase | CLV88_103192 | Not Available | Negative | 1503043 - 1505472 | 89597.5 |
| dna-binding transcriptional lysr family regulator | CLV88_103193 | Not Available | Negative | 1505593 - 1506567 | 36220.0 |
| taurine transport system substrate-binding protein | CLV88_103194 | Not Available | Positive | 1506763 - 1507767 | 34948.3 |
| taurine transport system atp-binding protein | CLV88_103195 | Not Available | Positive | 1507872 - 1508678 | 29617.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
