Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_103176 | Not Available | Negative | 1485826 - 1486065 | 8998.63 |
| nuclease-like protein | CLV88_103177 | Not Available | Negative | 1486105 - 1486713 | 23239.3 |
| hypothetical protein | CLV88_103178 | Not Available | Negative | 1487059 - 1487340 | 10675.4 |
| hypothetical protein | CLV88_103179 | Not Available | Negative | 1488464 - 1489000 | 20033.4 |
| radical sam superfamily enzyme ygiq (upf0313 family) | CLV88_103180 | Not Available | Negative | 1489223 - 1490848 | 60828.5 |
| nucleoside-diphosphate-sugar epimerase | CLV88_103181 | Not Available | Negative | 1490917 - 1491909 | 36042.1 |
| glycine c-acetyltransferase | CLV88_103182 | Not Available | Positive | 1491988 - 1493274 | 46399.6 |
| acetyltransferase (gnat) family protein | CLV88_103183 | Not Available | Positive | 1493274 - 1494416 | 43472.1 |
| hlyd family secretion protein | CLV88_103184 | Not Available | Positive | 1494440 - 1495453 | 35713.9 |
| sulfate-transporting atpase | CLV88_103185 | Not Available | Negative | 1495440 - 1496579 | 42060.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
