Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent ferric siderophore reductase | CLV88_101117 | Not Available | Negative | 116668 - 117444 | 28407.6 |
| fe-mn family superoxide dismutase | CLV88_101118 | Not Available | Negative | 117590 - 118189 | 21927.4 |
| hypothetical protein | CLV88_101119 | Not Available | Negative | 118404 - 118685 | 10534.6 |
| sarcosine oxidase subunit gamma | CLV88_101120 | Not Available | Negative | 118904 - 119470 | 19904.7 |
| sarcosine oxidase subunit alpha | CLV88_101121 | Not Available | Negative | 119463 - 122477 | 109111.0 |
| sarcosine oxidase subunit delta | CLV88_101122 | Not Available | Negative | 122474 - 122803 | 12589.6 |
| hypothetical protein | CLV88_101123 | Not Available | Positive | 122889 - 123014 | 4830.62 |
| sarcosine oxidase subunit beta | CLV88_101124 | Not Available | Negative | 123024 - 124271 | 44922.9 |
| cytochrome c-type biogenesis protein ccmh | CLV88_101125 | Not Available | Positive | 124476 - 125708 | 44837.1 |
| putative holliday junction resolvase | CLV88_101126 | Not Available | Positive | 125708 - 126190 | 17303.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
