Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate-ammonia-ligase adenylyltransferase | CLV88_103146 | Not Available | Positive | 1455386 - 1458172 | 101310.0 |
| hypothetical protein | CLV88_103147 | Not Available | Positive | 1458177 - 1458443 | 10070.0 |
| hypothetical protein | CLV88_103148 | Not Available | Positive | 1458656 - 1459312 | 23310.2 |
| sam-dependent methyltransferase | CLV88_103149 | Not Available | Positive | 1459366 - 1460565 | 42097.5 |
| pin domain-containing protein | CLV88_103150 | Not Available | Positive | 1460565 - 1461104 | 19594.8 |
| fumarylpyruvate hydrolase | CLV88_103151 | Not Available | Positive | 1461157 - 1461852 | 25405.0 |
| reductive dehalogenase | CLV88_103152 | Not Available | Positive | 1461989 - 1465195 | 118278.0 |
| multiple antibiotic resistance protein | CLV88_103153 | Not Available | Negative | 1465203 - 1465835 | 21909.6 |
| acetate kinase | CLV88_103154 | Not Available | Negative | 1465898 - 1467055 | 40543.5 |
| phosphotransacetylase | CLV88_103155 | Not Available | Negative | 1467052 - 1467993 | 32723.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
