Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_103117 | Not Available | Negative | 1430932 - 1431189 | 10297.3 |
| hypothetical protein | CLV88_103118 | Not Available | Negative | 1431205 - 1431492 | 10498.3 |
| Trna-val | Not Available | Not Available | Positive | 1432070 - 1432139 | Not Available |
| hypothetical protein | CLV88_103119 | Not Available | Positive | 1432196 - 1432426 | 8445.41 |
| caax prenyl protease-like protein | CLV88_103120 | Not Available | Negative | 1432577 - 1433347 | 27932.8 |
| tetr family transcriptional regulator | CLV88_103121 | Not Available | Negative | 1433347 - 1433952 | 21930.4 |
| hypothetical protein | CLV88_103122 | Not Available | Positive | 1434798 - 1434932 | 5092.85 |
| arac family transcriptional regulator with amidase-like domain | CLV88_103123 | Not Available | Negative | 1435058 - 1436059 | 37075.4 |
| Trna-val | Not Available | Not Available | Positive | 1436178 - 1436253 | Not Available |
| hypothetical protein | CLV88_103125 | Not Available | Negative | 1436411 - 1436596 | 6177.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
