Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spfh domain-containing protein | CLV88_103107 | Not Available | Negative | 1420984 - 1421874 | 32024.6 |
| putative mfs family arabinose efflux permease | CLV88_103108 | Not Available | Negative | 1422004 - 1423206 | 41846.6 |
| pp_01408 | CLV88_103109 | Not Available | Positive | 1423360 - 1424490 | Not Available |
| eama domain-containing membrane protein rard | CLV88_103110 | Not Available | Positive | 1424547 - 1425467 | 32597.7 |
| atp-dependent proteinase | CLV88_103111 | Not Available | Positive | 1425740 - 1428145 | 88128.3 |
| dna-binding protein | CLV88_103112 | Not Available | Positive | 1428318 - 1428731 | 14387.4 |
| Trna-val | Not Available | Not Available | Positive | 1428751 - 1428825 | Not Available |
| hypothetical protein | CLV88_103114 | Not Available | Positive | 1429053 - 1429466 | 16297.5 |
| 5-methylcytosine-specific restriction protein a | CLV88_103115 | Not Available | Positive | 1429665 - 1430483 | 30397.6 |
| hypothetical protein | CLV88_103116 | Not Available | Negative | 1430513 - 1430935 | 14698.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
