Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate-binding protein dctp | CLV88_10397 | Not Available | Positive | 1413551 - 1414555 | 36451.2 |
| c4-dicarboxylate transporter dctq subunit | CLV88_10398 | Not Available | Positive | 1414697 - 1415362 | 24818.4 |
| c4-dicarboxylate transporter dctm subunit | CLV88_10399 | Not Available | Positive | 1415362 - 1416741 | 48163.3 |
| hypothetical protein | CLV88_103100 | Not Available | Positive | 1416872 - 1417300 | 14932.1 |
| triosephosphate isomerase | CLV88_103101 | Not Available | Negative | 1417398 - 1418141 | 25634.3 |
| iron-binding apoprotein isca | CLV88_103102 | Not Available | Negative | 1418225 - 1418623 | 14147.9 |
| fes assembly suf system protein | CLV88_103103 | Not Available | Negative | 1418652 - 1419026 | 13254.8 |
| hypothetical protein | CLV88_103104 | Not Available | Negative | 1419162 - 1419623 | 17021.9 |
| hypothetical protein | CLV88_103105 | Not Available | Negative | 1419711 - 1420625 | 33808.3 |
| nfed-like partner-binding protein | CLV88_103106 | Not Available | Negative | 1420709 - 1420984 | 9957.74 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
