Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoadenylylsulfate reductase (thioredoxin) | CLV88_10387 | Not Available | Negative | 1402626 - 1403432 | 29569.1 |
| sulfite reductase (nadph) hemoprotein beta-component | CLV88_10388 | Not Available | Negative | 1403422 - 1405089 | 61597.3 |
| uncharacterized protein duf2849 | CLV88_10389 | Not Available | Negative | 1405117 - 1405428 | 11289.2 |
| uroporphyrin-iii c-methyltransferase | CLV88_10390 | Not Available | Negative | 1405428 - 1406246 | 28367.1 |
| asnc family transcriptional regulator | CLV88_10391 | Not Available | Positive | 1406388 - 1406849 | 17513.3 |
| adenylate cyclase | CLV88_10392 | Not Available | Negative | 1406846 - 1408006 | 42278.4 |
| unspecific monooxygenase | CLV88_10393 | Not Available | Negative | 1408038 - 1409237 | 45019.8 |
| two-component system c4-dicarboxylate transport sensor histidine kinase dctb | CLV88_10394 | Not Available | Positive | 1409414 - 1411174 | 63490.2 |
| two-component system c4-dicarboxylate transport response regulator dctd | CLV88_10395 | Not Available | Positive | 1411171 - 1412397 | 43847.2 |
| hypothetical protein | CLV88_10396 | Not Available | Positive | 1412456 - 1413097 | 23023.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
