Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioesterase superfamily protein | CLV88_10366 | Not Available | Positive | 1384643 - 1384924 | 10488.7 |
| orotate phosphoribosyltransferase | CLV88_10367 | Not Available | Negative | 1384957 - 1385637 | 24871.8 |
| dihydroorotase | CLV88_10368 | Not Available | Negative | 1385723 - 1386766 | 37810.0 |
| uncharacterized protein duf2796 | CLV88_10369 | Not Available | Positive | 1387085 - 1387768 | 24766.6 |
| putative abc transport system atp-binding protein | CLV88_10370 | Not Available | Positive | 1387771 - 1388472 | 25184.4 |
| putative abc transport system permease protein | CLV88_10371 | Not Available | Positive | 1388469 - 1389719 | 44512.9 |
| hypothetical protein | CLV88_10372 | Not Available | Positive | 1389996 - 1390397 | 14988.3 |
| hypothetical protein | CLV88_10373 | Not Available | Positive | 1390422 - 1390844 | 15660.3 |
| moxr-like atpase | CLV88_10374 | Not Available | Positive | 1390865 - 1391773 | 33101.0 |
| hypothetical protein | CLV88_10375 | Not Available | Positive | 1391843 - 1393099 | 47149.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
