Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase family protein | CLV88_10356 | Not Available | Negative | 1375210 - 1375857 | 23305.8 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | CLV88_10357 | Not Available | Negative | 1375908 - 1376564 | 23365.7 |
| hypothetical protein | CLV88_10358 | Not Available | Negative | 1376643 - 1376900 | 8736.72 |
| amidophosphoribosyltransferase | CLV88_10359 | Not Available | Negative | 1377036 - 1378502 | 53533.2 |
| trap-type uncharacterized transport system substrate-binding protein | CLV88_10360 | Not Available | Negative | 1378655 - 1379917 | 46988.6 |
| type i phosphodiesterase/nucleotide pyrophosphatase | CLV88_10361 | Not Available | Positive | 1380062 - 1381726 | 60590.4 |
| membrane protein required for colicin v production | CLV88_10362 | Not Available | Negative | 1381798 - 1382352 | 19720.2 |
| dna repair protein rada/sms | CLV88_10363 | Not Available | Negative | 1382397 - 1383782 | 48384.2 |
| paraquat-inducible protein a | CLV88_10364 | Not Available | Negative | 1383782 - 1384210 | 15518.0 |
| hypothetical protein | CLV88_10365 | Not Available | Positive | 1384502 - 1384639 | 4848.78 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
