Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug efflux pump | CLV88_101107 | Not Available | Positive | 103751 - 107611 | 139197.0 |
| reductive dehalogenase | CLV88_101108 | Not Available | Positive | 107707 - 108924 | 45468.6 |
| flavin-dependent amine oxidoreductase | CLV88_101109 | Not Available | Positive | 108924 - 110135 | 43922.1 |
| uncharacterized membrane protein ysda (duf1294 family) | CLV88_101110 | Not Available | Positive | 110242 - 110667 | 15136.5 |
| atp-binding cassette subfamily b protein | CLV88_101111 | Not Available | Negative | 110676 - 112502 | 67478.7 |
| lysm domain-containing protein | CLV88_101112 | Not Available | Negative | 112601 - 114487 | 64299.9 |
| hypothetical protein | CLV88_101113 | Not Available | Positive | 114586 - 115137 | 19887.1 |
| chloramphenicol-sensitive protein rard | CLV88_101114 | Not Available | Negative | 115080 - 115994 | 32951.3 |
| hypothetical protein | CLV88_101115 | Not Available | Negative | 116234 - 116464 | 8509.23 |
| hypothetical protein | CLV88_101116 | Not Available | Negative | 116528 - 116644 | 4302.59 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
