Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bira family biotin operon repressor/biotin-[acetyl-coa-carboxylase] ligase | CLV88_10336 | Not Available | Positive | 1354672 - 1355424 | 26572.8 |
| type iii pantothenate kinase | CLV88_10337 | Not Available | Positive | 1355447 - 1356223 | 27923.4 |
| ribonuclease j | CLV88_10338 | Not Available | Positive | 1356220 - 1357887 | 60482.3 |
| atp-dependent rna helicase rhle | CLV88_10339 | Not Available | Negative | 1357962 - 1359392 | 52816.1 |
| glycosyl transferase family 2 | CLV88_10340 | Not Available | Negative | 1359568 - 1360524 | 36416.4 |
| hypothetical protein | CLV88_10341 | Not Available | Negative | 1360521 - 1361276 | 28813.6 |
| peptide chain release factor 3 (brf-3) | CLV88_10342 | Not Available | Negative | 1361324 - 1362931 | 60009.1 |
| hint domain-containing protein | CLV88_10343 | Not Available | Negative | 1363032 - 1364051 | 36984.8 |
| 3-oxoacyl-[acyl-carrier protein] reductase | CLV88_10344 | Not Available | Positive | 1364103 - 1364969 | 29797.7 |
| 3-methyladenine dna glycosylase alkc | CLV88_10345 | Not Available | Positive | 1364973 - 1366103 | 41411.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
