Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| imidazole glycerol phosphate synthase subunit hisf | CLV88_10326 | Not Available | Negative | 1348000 - 1348761 | 26422.9 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | CLV88_10327 | Not Available | Negative | 1348862 - 1349584 | 25119.0 |
| uncharacterized protein (duf2147 family) | CLV88_10328 | Not Available | Positive | 1349727 - 1350122 | 13624.4 |
| peroxiredoxin | CLV88_10329 | Not Available | Negative | 1350161 - 1350697 | 19586.3 |
| arac family transcriptional regulator | CLV88_10330 | Not Available | Positive | 1350767 - 1351507 | 27189.0 |
| imidazole glycerol phosphate synthase subunit hish | CLV88_10331 | Not Available | Negative | 1351578 - 1352216 | 23413.9 |
| tetr family transcriptional regulator | CLV88_10332 | Not Available | Negative | 1352278 - 1352889 | 22057.5 |
| putative membrane protein duf2306 | CLV88_10333 | Not Available | Positive | 1352983 - 1353600 | 22803.7 |
| imidazoleglycerol-phosphate dehydratase | CLV88_10334 | Not Available | Negative | 1353597 - 1354184 | 21613.5 |
| asnc family transcriptional regulator | CLV88_10335 | Not Available | Positive | 1354319 - 1354558 | 9054.97 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
