Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate/(r)-2-methylmalate dehydratase large subunit | CLV88_10317 | Not Available | Negative | 1338902 - 1340281 | 48944.3 |
| haloacetate dehalogenase | CLV88_10318 | Not Available | Negative | 1340278 - 1341183 | 33895.3 |
| c4-dicarboxylate-binding protein dctp | CLV88_10319 | Not Available | Positive | 1341369 - 1342370 | 36568.3 |
| c4-dicarboxylate transporter dctq subunit | CLV88_10320 | Not Available | Positive | 1342463 - 1343128 | 24818.4 |
| c4-dicarboxylate transporter dctm subunit | CLV88_10321 | Not Available | Positive | 1343128 - 1344507 | 48163.3 |
| Trna-pseudo | Not Available | Not Available | Positive | 1344961 - 1345044 | Not Available |
| 23s rrna (guanosine2251-2'-o)-methyltransferase | CLV88_10322 | Not Available | Positive | 1345180 - 1345959 | 27981.6 |
| hypothetical protein | CLV88_10323 | Not Available | Positive | 1346591 - 1347058 | 17109.0 |
| hypothetical protein | CLV88_10324 | Not Available | Negative | 1347075 - 1347617 | 20539.4 |
| phosphoribosyl-atp pyrophosphatase | CLV88_10325 | Not Available | Negative | 1347695 - 1348003 | 10967.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
