Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf1059 | CLV88_102504 | Not Available | Positive | 1321810 - 1322010 | 7397.66 |
| rhodanese-related sulfurtransferase | CLV88_102505 | Not Available | Positive | 1322045 - 1322440 | 13964.6 |
| uncharacterized protein (tigr02246 family) | CLV88_102506 | Not Available | Positive | 1322603 - 1323028 | 15416.0 |
| hypothetical protein | CLV88_102507 | Not Available | Positive | 1323066 - 1323152 | 3488.4 |
| helix-turn-helix protein | CLV88_1031 | Not Available | Negative | 1323448 - 1324404 | 35725.6 |
| arylsulfatase | CLV88_1032 | Not Available | Positive | 1324689 - 1326419 | 64208.0 |
| hypothetical protein | CLV88_1033 | Not Available | Positive | 1326657 - 1326908 | 9359.64 |
| dna-binding gntr family transcriptional regulator | CLV88_1034 | Not Available | Negative | 1326804 - 1327481 | 25346.7 |
| putative dehydrogenase | CLV88_1035 | Not Available | Negative | 1327484 - 1328503 | 37892.9 |
| 3-isopropylmalate dehydrogenase | CLV88_1036 | Not Available | Negative | 1328500 - 1329591 | 38459.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
