Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | CLV88_102494 | Not Available | Positive | 1311108 - 1311761 | 24924.9 |
| hupe/urej protein | CLV88_102495 | Not Available | Negative | 1312552 - 1313709 | 42442.8 |
| secreted protein | CLV88_102496 | Not Available | Negative | 1313729 - 1314892 | 42619.0 |
| gyd domain-containing protein | CLV88_102497 | Not Available | Negative | 1315005 - 1315403 | 14495.6 |
| imidazolonepropionase-like amidohydrolase | CLV88_102498 | Not Available | Negative | 1315462 - 1316814 | 48648.9 |
| imidazolonepropionase-like amidohydrolase | CLV88_102499 | Not Available | Negative | 1316883 - 1318256 | 49548.8 |
| arac-like dna-binding protein | CLV88_102500 | Not Available | Positive | 1318376 - 1319377 | 36953.1 |
| p4 family phage/plasmid primase-like protein | CLV88_102501 | Not Available | Positive | 1319615 - 1320565 | 34841.7 |
| hypothetical protein | CLV88_102502 | Not Available | Positive | 1320825 - 1321361 | 19804.6 |
| hypothetical protein | CLV88_102503 | Not Available | Positive | 1321351 - 1321620 | 9978.98 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
