Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase-1/2/3 large subunit | CLV88_102484 | Not Available | Negative | 1298954 - 1300747 | 63999.4 |
| sulfoacetaldehyde dehydrogenase | CLV88_102485 | Not Available | Negative | 1300747 - 1302156 | 51091.7 |
| sugar phosphate isomerase/epimerase | CLV88_102486 | Not Available | Negative | 1302184 - 1303047 | 32021.4 |
| citrate synthase | CLV88_102487 | Not Available | Negative | 1303294 - 1304106 | 29295.3 |
| shikimate dehydrogenase | CLV88_102488 | Not Available | Negative | 1304120 - 1304971 | 30147.3 |
| 4-hydroxyphenylpyruvate dioxygenase | CLV88_102489 | Not Available | Negative | 1304974 - 1306857 | 68596.2 |
| tripartite atp-independent transporter dctm subunit | CLV88_102490 | Not Available | Negative | 1306857 - 1308152 | 45103.2 |
| c4-dicarboxylate transporter dctq subunit | CLV88_102491 | Not Available | Negative | 1308149 - 1308712 | 21548.7 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | CLV88_102492 | Not Available | Negative | 1308740 - 1309750 | 36497.3 |
| putative dehydrogenase | CLV88_102493 | Not Available | Negative | 1309839 - 1310933 | 38741.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
