Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase i | CLV88_102474 | Not Available | Negative | 1288939 - 1291734 | 102531.0 |
| saccharopine dehydrogenase (nad+, l-lysine-forming) | CLV88_102475 | Not Available | Positive | 1291957 - 1293012 | 37399.5 |
| saccharopine dehydrogenase (nadp+, l-glutamate forming) | CLV88_102476 | Not Available | Positive | 1293026 - 1294171 | 41625.3 |
| putative nadph-quinone reductase | CLV88_102477 | Not Available | Negative | 1294214 - 1294807 | 21622.6 |
| tetr family transcriptional regulator | CLV88_102478 | Not Available | Positive | 1294918 - 1295502 | 21679.4 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit | CLV88_102479 | Not Available | Positive | 1295698 - 1296906 | 43072.2 |
| hypothetical protein | CLV88_102480 | Not Available | Negative | 1296992 - 1297276 | 10904.9 |
| hypothetical protein | CLV88_102481 | Not Available | Positive | 1297404 - 1297754 | 13703.5 |
| hypothetical protein | CLV88_102482 | Not Available | Negative | 1297744 - 1298217 | 17809.5 |
| chat domain-containing protein | CLV88_102483 | Not Available | Negative | 1298465 - 1298803 | 12007.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
