Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxyl-terminal processing protease | CLV88_102464 | Not Available | Negative | 1276333 - 1277667 | 47851.4 |
| septal ring factor envc (amia/amib activator) | CLV88_102465 | Not Available | Negative | 1277671 - 1278807 | 39900.8 |
| phosphoglycerate mutase | CLV88_102466 | Not Available | Negative | 1278804 - 1280324 | 53326.9 |
| hypothetical protein | CLV88_102467 | Not Available | Negative | 1280448 - 1282493 | 73671.3 |
| putative membrane protein (tigr02226 family) | CLV88_102468 | Not Available | Negative | 1282490 - 1285234 | 97813.3 |
| uncharacterized protein duf58 | CLV88_102469 | Not Available | Negative | 1285231 - 1286103 | 32385.9 |
| moxr-like atpase | CLV88_102470 | Not Available | Negative | 1286100 - 1287107 | 36346.9 |
| hypothetical protein | CLV88_102471 | Not Available | Positive | 1287162 - 1287767 | 22058.3 |
| hydroxypyruvate isomerase | CLV88_102472 | Not Available | Positive | 1287856 - 1288617 | 27924.0 |
| hypothetical protein | CLV88_102473 | Not Available | Negative | 1288598 - 1288939 | 12906.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
