Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10197 | Not Available | Negative | 92242 - 93006 | 27184.5 |
| protein translocase subunit secf | CLV88_10198 | Not Available | Negative | 92999 - 93970 | 35337.2 |
| preprotein translocase subunit secd | CLV88_10199 | Not Available | Negative | 93974 - 95635 | 59317.0 |
| protein translocase subunit yajc | CLV88_101100 | Not Available | Negative | 95657 - 95941 | 10386.9 |
| seryl-trna synthetase | CLV88_101101 | Not Available | Positive | 96158 - 97450 | 46365.9 |
| omega-6 fatty acid desaturase (delta-12 desaturase) | CLV88_101102 | Not Available | Negative | 97541 - 98527 | 38262.0 |
| gtp-binding protein | CLV88_101103 | Not Available | Negative | 98685 - 100175 | 54903.2 |
| outer membrane protein assembly factor bamb | CLV88_101104 | Not Available | Negative | 100225 - 101529 | 45971.4 |
| hypothetical protein | CLV88_101105 | Not Available | Negative | 101555 - 102235 | 23347.8 |
| multidrug efflux system membrane fusion protein | CLV88_101106 | Not Available | Positive | 102492 - 103754 | 44049.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
