Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenylate/guanylate cyclase | CLV88_102454 | Not Available | Negative | 1266349 - 1267755 | 52671.9 |
| modification methylase | CLV88_102455 | Not Available | Negative | 1267919 - 1269034 | 41704.6 |
| rnase hii | CLV88_102456 | Not Available | Negative | 1269143 - 1269760 | 22041.3 |
| hypothetical protein | CLV88_102457 | Not Available | Negative | 1269865 - 1270305 | 16338.8 |
| hypothetical protein | CLV88_102458 | Not Available | Positive | 1270485 - 1270787 | 10911.1 |
| hypothetical protein | CLV88_102459 | Not Available | Positive | 1270759 - 1271463 | 25517.6 |
| adenylate/guanylate cyclase | CLV88_102460 | Not Available | Positive | 1271581 - 1273131 | 56983.8 |
| putative (di)nucleoside polyphosphate hydrolase | CLV88_102461 | Not Available | Negative | 1273142 - 1273624 | 18391.7 |
| uncharacterized protein duf1254 | CLV88_102462 | Not Available | Positive | 1274026 - 1275093 | 38089.6 |
| uncharacterized protein duf1254 | CLV88_102463 | Not Available | Positive | 1275112 - 1276107 | 36200.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
